Lollipop Chart of Pathway Divergence — plot_divergence • transitiontrees

Lollipop chart of per-pathway Kullback-Leibler divergence from the (k-1)-suffix. Point size is proportional to pathway count; orange points mark pathways whose modal next state flips between orders. Annotates each flip with the prediction change, e.g. "Disengaged -> Active".

Usage

plot_divergence(tree, top = 15L, min_count = 5L, title = NULL, ...)

Arguments

tree: A transitiontrees.
top: Integer. Number of pathways to show. Default 15.
min_count: Integer. Drop pathways below this count. Default 5.
title: Character. Plot title; if NULL (default) a default title is used.
...: Ignored.

Value

A ggplot object.

Examples

# \donttest{
seqs <- replicate(50, sample(c("A", "B", "C"), 12, replace = TRUE),
                  simplify = FALSE)
tree <- context_tree(seqs, max_depth = 3L)
plot_divergence(tree)

# }